relationship-to-agentic-proteins

Scope: Comparison to agentic-proteins.
Audience: Readers familiar with both projects.
Guarantees: Explicit similarities and differences.
Non-Goals: Marketing claims.
Why: This doc exists to record its single responsibility for review.

Shared Philosophy

Both projects enforce determinism, provenance, and audit-ready outputs. Both treat invariants as non-negotiable contracts, not optional best practices.

Intentional Differences

Agentic-proteins focuses on protein design workflows and domain-specific artifacts. Agentic-flows generalizes the same execution guarantees to broader agent workflows and replayable traces.

Comparison

Area	agentic-proteins	agentic-flows
Scope	Protein design runtime	General execution and replay framework
Artifacts	Domain-specific design artifacts	Cross-domain execution artifacts
Primary users	Bio design teams	Research and platform teams
CLI focus	Design-centric commands	Flow, replay, and diff commands
Contracts	Protein-domain invariants	Execution invariants across agents